Lorena A. Barba group

2013

View all publications as a chronological list

All Publications

  • "Petascale turbulence simulation using a highly parallel fast multipole method", Rio Yokota, L. A. Barba, Tetsu Narumi, Kenji Yasuoka. Comput. Phys. Comm., 184(3):445–455 (March 2013). 10.1016/j.cpc.2012.09.011 // Preprint arXiv:1106.5273 // exaFMM code webpage

    Published online 13 Sept. 2012.

  • "FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method", Rio Yokota, L. A. Barba. Computers & Fluids, 80:17–27 (July 2013). 10.1016/j.compfluid.2012.08.002 // Preprint arXiv:1110.2921

    Published online 13 Aug. 2012.

  • "Validation of the PyGBe code for Poisson-Boltzmann equation with boundary element methods", Christopher D. Cooper, L. A. Barba. (25 January 2013). 10.6084/m9.figshare.154331 // Code repository

    Technical Report published on figshare under CC-BY-NC-SA.

  • "Everybody's Flippin' —An update on the flipped classroom", L. A. Barba. (17 February 2013). 10.6084/m9.figshare.157200 // Blog post

    Full-length video (screencast) from the talk, published on figshare under CC-BY

  • "Flying snake wake visualizations with cuIBM", Anush Krishnan, L. A. Barba. (19 February 2013). 10.6084/m9.figshare.157334

    Video published on figshare under CC-BY.

  • "PyGBe: Python on the surface, GPUs at the heart. BEM solver for Electrostatics of Biomolecules", Christopher D. Cooper, L. A. Barba. (13 March 2013). 10.6084/m9.figshare.650855 // Code repository

    Poster presented at the GPU Technology Conference, GTC13, published on figshare under CC-BY.

  • "Lift and drag coefficient versus angle of attack for a flying snake cross-section", Anush Krishnan, John J. Socha, Pavlos V. Vlachos, L. A. Barba. (May 2013). 10.6084/m9.figshare.705883 // Paper preprint //

    Data set, plots in PDF and plotting script.

  • "Body cross-section of the flying snake Chrysopelea paradisi", Anush Krishnan, John J. Socha, Pavlos V. Vlachos, L. A. Barba. (May 2013). 10.6084/m9.figshare.705877 // Paper preprint

    Data set, plot and plotting script.

  • "Convergence of PyGBE with Kirkwood sphere", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. (September 2013). 10.6084/m9.figshare.799692

    File bundle including data, figures and plotting scripts of convergence results for PyGBe and APBS using a spherical molecule. On figshare under CC-BY.

  • "Convergence and time to solution of PyGBe with lysozyme molecule", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba, . (September 2013). 10.6084/m9.figshare.799702

    File bundle including data, figures and plotting scripts of convergence and time-to-solution versus error for PyGBe and APBS using a lysozyme molecule. On figshare under CC-BY.

  • "Binding energy of trypsin-BPTI complex with PyGBe and APBS", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. (September 2013). 10.6084/m9.figshare.799703

    File bundle including data, figures and plotting scripts of solvation energy and binding energy calculations for trypsin-BPTI complex using PyGBe and APBS. On figshare under CC-BY.

  • "Binding energy of peptide-RNA complex with PyGBe and APBS", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. (September 2013). 10.6084/m9.figshare.799704

    File bundle including data, figures and plotting scripts of solvation energy and binding energy calculations for peptide-RNA complex using PyGBe and APBS. On figshare under CC-BY.

  • "How will the fast multipole method fare in the exascale era?", Lorena A. Barba, Rio Yokota. SIAM News, 46(6):1 (July 2013), Society of Industrial and Applied Mathematics. // SIAM News link
  • "Proposal: Just-in-time Interactive Online Modules for Applied Engineering Computing", Lorena A. Barba, Adam M. Wickenheiser. (December 2013). 10.6084/m9.figshare.870513 // TLC Grants Program

    This proposal was funded by internal peer-reviewed competition in November 2013.Grants for High-Impact Teaching and Learning Practices,  The Office of Teaching & Learning, George Washington University.

Refereed Journal Articles

Open Research

  • "Validation of the PyGBe code for Poisson-Boltzmann equation with boundary element methods", Christopher D. Cooper, L. A. Barba. (25 January 2013). 10.6084/m9.figshare.154331 // Code repository

    Technical Report published on figshare under CC-BY-NC-SA.

  • "Everybody's Flippin' —An update on the flipped classroom", L. A. Barba. (17 February 2013). 10.6084/m9.figshare.157200 // Blog post

    Full-length video (screencast) from the talk, published on figshare under CC-BY

  • "Flying snake wake visualizations with cuIBM", Anush Krishnan, L. A. Barba. (19 February 2013). 10.6084/m9.figshare.157334

    Video published on figshare under CC-BY.

  • "PyGBe: Python on the surface, GPUs at the heart. BEM solver for Electrostatics of Biomolecules", Christopher D. Cooper, L. A. Barba. (13 March 2013). 10.6084/m9.figshare.650855 // Code repository

    Poster presented at the GPU Technology Conference, GTC13, published on figshare under CC-BY.

  • "Lift and drag coefficient versus angle of attack for a flying snake cross-section", Anush Krishnan, John J. Socha, Pavlos V. Vlachos, L. A. Barba. (May 2013). 10.6084/m9.figshare.705883 // Paper preprint //

    Data set, plots in PDF and plotting script.

  • "Body cross-section of the flying snake Chrysopelea paradisi", Anush Krishnan, John J. Socha, Pavlos V. Vlachos, L. A. Barba. (May 2013). 10.6084/m9.figshare.705877 // Paper preprint

    Data set, plot and plotting script.

  • "Convergence of PyGBE with Kirkwood sphere", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. (September 2013). 10.6084/m9.figshare.799692

    File bundle including data, figures and plotting scripts of convergence results for PyGBe and APBS using a spherical molecule. On figshare under CC-BY.

  • "Convergence and time to solution of PyGBe with lysozyme molecule", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba, . (September 2013). 10.6084/m9.figshare.799702

    File bundle including data, figures and plotting scripts of convergence and time-to-solution versus error for PyGBe and APBS using a lysozyme molecule. On figshare under CC-BY.

  • "Binding energy of trypsin-BPTI complex with PyGBe and APBS", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. (September 2013). 10.6084/m9.figshare.799703

    File bundle including data, figures and plotting scripts of solvation energy and binding energy calculations for trypsin-BPTI complex using PyGBe and APBS. On figshare under CC-BY.

  • "Binding energy of peptide-RNA complex with PyGBe and APBS", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. (September 2013). 10.6084/m9.figshare.799704

    File bundle including data, figures and plotting scripts of solvation energy and binding energy calculations for peptide-RNA complex using PyGBe and APBS. On figshare under CC-BY.

  • "Proposal: Just-in-time Interactive Online Modules for Applied Engineering Computing", Lorena A. Barba, Adam M. Wickenheiser. (December 2013). 10.6084/m9.figshare.870513 // TLC Grants Program

    This proposal was funded by internal peer-reviewed competition in November 2013.Grants for High-Impact Teaching and Learning Practices,  The Office of Teaching & Learning, George Washington University.

Periodicals

  • "How will the fast multipole method fare in the exascale era?", Lorena A. Barba, Rio Yokota. SIAM News, 46(6):1 (July 2013), Society of Industrial and Applied Mathematics. // SIAM News link