Natalia Clementi presents PhD dissertation proposal

Natalia Clementi presented her PhD dissertation proposal on May 24, 2019.

Natalia Clementi has a Physics degree from National University of Cordoba, Argentina. She came to GW in 2014 to join Prof. Barba's research group, and also collaborates with Barba-group alumnus Christopher Cooper.

References

• "Computational nanoplasmonics in the quasistatic limit for biosensing applications", Natalia C. Clementi, Christopher D. Cooper, Lorena A. Barba. Physical Review E, 100:063305 (Dec. 2019). 10.1103/PhysRevE.100.063305 // Preprint arXiv:1812.10722 // paper repository // reproducibility packages
• "PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics", Natalia C. Clementi, Gilbert Forsyth, Christopher D. Cooper, Lorena A. Barba. The Journal of Open Source Software, 2(19):306 (November 2017). 10.21105/joss.00306 // Code repository
  

  Open access.

• "PyGBe on Localized Surface Plasmon Resonance (LSPR)", Natalia C. Clementi, Christopher D. Cooper, Gilbert Forsyth, Lorena A. Barba. (May 2017). 10.6084/m9.figshare.4983311.v3 // nbviewer // code
  

  Jupyter notebook, preliminary results. On figshare under CC-BY.

• "PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics", Christopher D. Cooper, Natalia C. Clementi, Gilbert Forsyth, Lorena A. Barba. The Journal of Open Source Software, 1(4) (August 2016). 10.21105/joss.00043 // Code repository
• "Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design", Christopher D. Cooper, Natalia C. Clementi, Lorena A. Barba. J. Chem. Phys., 143:124709 (September 2015). 10.1063/1.4931113 // Preprint arXiv:1503.08150v4 // code repository // manuscript repository // figshare: orientation of protein GB1 // figshare: orientation of immunoglobulin G // figshare: grid convergence, immunoglobulin G
  

  Version 3 of the preprint is the version submitted to a journal, after the original manuscript was split in two. Version 4 is the post peer-review revision.