Lorena A. Barba group

2021-2022

View all publications as a chronological list

All Publications

  • "Reproducible validation and replication studies in nanoscale physics", Natalia C. Clementi, Lorena A. Barba. Philosophical Transactions of the Royal Society A, 379(2197):20200068 (March 2021). 10.1098/rsta.2020.0068 // Preprint arXiv:2008.05414 // manuscript repository

    Published online 29/03/2021. Published in print 17/05/2021.

  • "Trustworthy computational evidence through transparency and reproducibility", Lorena A. Barba. Computing in Science and Engineering, 23(1):58-64 (Jan/Feb 2021), IEEE Computer Society. 10.1109/MCSE.2020.3048406 // Preprint on Authorea.
  • "High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm", Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba. (March 2021). Preprint arXiv:2103.01048 // manuscript repository // archive: meshes and pqr files // archive: manuscript and repro-pack
  • "High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm (meshes and pqr files)", Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba. (2021). 10.5281/zenodo.4568768

    Reproducibility package.

  • "High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm (manuscript and repro-pack)", Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba. (2021). 10.5281/zenodo.4568951

    Archive of the manuscript GitHub repository, upon submission of the paper.

  • "ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces", Tingyu Wang, Rio Yokota, Lorena A. Barba. The Journal of Open Source Software, 6(61):3145 (2021). 10.21105/joss.03145 // code repository
  • "geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events", Pi-Yueh Chuang, Tracy Thorleifson, Lorena A. Barba. The Journal of Open Source Software, 6(62):3114 (June 2021). 10.21105/joss.03114 // code repository
  • "[Re] Three-dimensional wake topology and propulsive performance of low-aspect-ratio pitching-rolling plates", Olivier Mesnard, Lorena A. Barba. ReScience C, 7(1):7 (August 2021). 10.5281/zenodo.5234931 // Preprint arXiv:2105.00775 // code and data // manuscript repository

    Open access. © The authors, CC-BY 4.0.

  • "The Python/Jupyter Ecosystem: Today’s Problem-Solving Environment for Computational Science", Lorena A. Barba. Computing in Science and Engineering, 23(3):5-9 (May/June 2021), IEEE Computer Society. 10.1109/MCSE.2021.3074693 // Preprint in Authorea
  • "Scientific Computing With Python on High-Performance Heterogeneous Systems", Lorena A. Barba, Andreas Klöckner, Prabhu Ramachandran, Rollin Thomas. Computing in Science & Engineering, 23(4):5–7 (July/August 2021), IEEE Computer Society. 10.1109/MCSE.2021.3088549

Refereed Journal Articles

  • "Reproducible validation and replication studies in nanoscale physics", Natalia C. Clementi, Lorena A. Barba. Philosophical Transactions of the Royal Society A, 379(2197):20200068 (March 2021). 10.1098/rsta.2020.0068 // Preprint arXiv:2008.05414 // manuscript repository

    Published online 29/03/2021. Published in print 17/05/2021.

  • "ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces", Tingyu Wang, Rio Yokota, Lorena A. Barba. The Journal of Open Source Software, 6(61):3145 (2021). 10.21105/joss.03145 // code repository
  • "geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events", Pi-Yueh Chuang, Tracy Thorleifson, Lorena A. Barba. The Journal of Open Source Software, 6(62):3114 (June 2021). 10.21105/joss.03114 // code repository
  • "[Re] Three-dimensional wake topology and propulsive performance of low-aspect-ratio pitching-rolling plates", Olivier Mesnard, Lorena A. Barba. ReScience C, 7(1):7 (August 2021). 10.5281/zenodo.5234931 // Preprint arXiv:2105.00775 // code and data // manuscript repository

    Open access. © The authors, CC-BY 4.0.

Open Research

  • "High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm", Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba. (March 2021). Preprint arXiv:2103.01048 // manuscript repository // archive: meshes and pqr files // archive: manuscript and repro-pack
  • "High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm (meshes and pqr files)", Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba. (2021). 10.5281/zenodo.4568768

    Reproducibility package.

  • "High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm (manuscript and repro-pack)", Tingyu Wang, Christopher D. Cooper, Timo Betcke, Lorena A. Barba. (2021). 10.5281/zenodo.4568951

    Archive of the manuscript GitHub repository, upon submission of the paper.

Periodicals

  • "Trustworthy computational evidence through transparency and reproducibility", Lorena A. Barba. Computing in Science and Engineering, 23(1):58-64 (Jan/Feb 2021), IEEE Computer Society. 10.1109/MCSE.2020.3048406 // Preprint on Authorea.
  • "The Python/Jupyter Ecosystem: Today’s Problem-Solving Environment for Computational Science", Lorena A. Barba. Computing in Science and Engineering, 23(3):5-9 (May/June 2021), IEEE Computer Society. 10.1109/MCSE.2021.3074693 // Preprint in Authorea
  • "Scientific Computing With Python on High-Performance Heterogeneous Systems", Lorena A. Barba, Andreas Klöckner, Prabhu Ramachandran, Rollin Thomas. Computing in Science & Engineering, 23(4):5–7 (July/August 2021), IEEE Computer Society. 10.1109/MCSE.2021.3088549