Natalia Clementi defended her PhD thesis

Lorena Barba and Natalia Clementi, working something out

Congratulations to Natalia Clementi, who successfully defended her thesis on February 16, 2021. Bravo!

Natalia is from Argentina, with a degree in physics from Universidad Nacional de Córdoba. She was recruited by Prof. Barba during the VI Latin American Symposium on High-Performance Computing (HPC-Latam) in July 2013, and arrived in Washington to join the Barbagroup in Summer of 2014.

Her thesis is titled "Computational Nanoplasmonics for Biosensing Applications: a Boundary Integral Implementation in the Quasistatic Limit."

Presentation slides

• Clementi, Natalia C. (2021): Natalia Clementi - PhD Thesis Defense - slides. figshare. Presentation. https://doi.org/10.6084/m9.figshare.14120264.v1

Video of the presentation

References

• "Reproducible validation and replication studies in nanoscale physics", Natalia C. Clementi, Lorena A. Barba. Philosophical Transactions of the Royal Society A, 379(2197):20200068 (March 2021). 10.1098/rsta.2020.0068 // Preprint arXiv:2008.05414 // manuscript repository
  

  Published online 29/03/2021. Published in print 17/05/2021.

• "Computational nanoplasmonics in the quasistatic limit for biosensing applications", Natalia C. Clementi, Christopher D. Cooper, Lorena A. Barba. Physical Review E, 100:063305 (Dec. 2019). 10.1103/PhysRevE.100.063305 // Preprint arXiv:1812.10722 // paper repository // reproducibility packages
• "PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics", Natalia C. Clementi, Gilbert Forsyth, Christopher D. Cooper, Lorena A. Barba. The Journal of Open Source Software, 2(19):306 (November 2017). 10.21105/joss.00306 // Code repository
  

  Open access.

• "PyGBe on Localized Surface Plasmon Resonance (LSPR)", Natalia C. Clementi, Christopher D. Cooper, Gilbert Forsyth, Lorena A. Barba. (May 2017). 10.6084/m9.figshare.4983311.v3 // nbviewer // code
  

  Jupyter notebook, preliminary results. On figshare under CC-BY.

• "PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics", Christopher D. Cooper, Natalia C. Clementi, Gilbert Forsyth, Lorena A. Barba. The Journal of Open Source Software, 1(4) (August 2016). 10.21105/joss.00043 // Code repository
• "Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design", Christopher D. Cooper, Natalia C. Clementi, Lorena A. Barba. J. Chem. Phys., 143:124709 (September 2015). 10.1063/1.4931113 // Preprint arXiv:1503.08150v4 // code repository // manuscript repository // figshare: orientation of protein GB1 // figshare: orientation of immunoglobulin G // figshare: grid convergence, immunoglobulin G
  

  Version 3 of the preprint is the version submitted to a journal, after the original manuscript was split in two. Version 4 is the post peer-review revision.

On Twitter

https://twitter.com/ncclementi/status/1361802207335755782

https://twitter.com/LorenaABarba/status/1376501893564833793

https://twitter.com/ncclementi/status/1384494808824225792